@adityajain42 My instinct is that, with the effect sizes you're claiming (+200%?), just 3 genes should give clear enough results to make a full 30-gene experiment a "clear yes" for follow-on funding. So considering the marginal value of the last ~$17k (compared to an initial $3k), I think it mostly comes down to faster timeline at the cost of some probability (30%?) of wasting the costs of genes 4 through 30.
(Let me know if you don't think that 3 genes would be >90% to demonstrate a clearly definitive result, conditional on the full panel returning a positive result.)
I'm not sure how much to care about publishing the intermediate result (since the next step would be going to the full 30-gene panel), so the main delay is in how much longer the two-stage (3+27) experiment would take than a one-stage (30 in parallel) experiment would. (Assuming you don't stop to publish the intermediate result.) Can you give a sense of the additional calendar time for two-stage?